This metagenomics pipeline analyzes reads from both targeted and whole genome sequencing. It is suitable for long and short-read sequencing technologies. Each read will be reported with its respective taxonomy. Additionally, you will receive a summary covering all organisms in your sample. Our databases cover organisms throughout the tree of life: Bacteria, archaea, fungi and further selected eukaryotes. As an additional feature, pathogenic bacteria or archaea are predicted in your sample. All results are visualized in intuitive interactive graphs.

The Metagenomics development team is open to suggestions and requests for implementing new targets.

Presented by Felix Manske, Marc-Nicolas Bendisch, Norbert Grundmann and Wojtek Makalowski

Logo created by Maciej Makalowski.